Index

_

_abc_impl (cybench.models.model.BaseModel attribute) (cybench.models.naive_models.AverageYieldModel attribute) (cybench.models.nn_models.BaselineInceptionTime attribute) (cybench.models.nn_models.BaselineLSTM attribute) (cybench.models.nn_models.BaselineTransformer attribute) (cybench.models.nn_models.BaseNNModel attribute) (cybench.models.residual_models.InceptionTimeRes attribute) (cybench.models.residual_models.LSTMRes attribute) (cybench.models.residual_models.RandomForestRes attribute) (cybench.models.residual_models.ResidualModel attribute) (cybench.models.residual_models.RidgeRes attribute) (cybench.models.residual_models.TransformerRes attribute) (cybench.models.sklearn_models.BaseSklearnModel attribute) (cybench.models.sklearn_models.SklearnRandomForest attribute) (cybench.models.sklearn_models.SklearnRidge attribute) (cybench.models.trend_models.TrendModel attribute) (cybench.runs.agml_workshop.LSTMModel attribute) _add_period() (in module cybench.util.features) _aggregate_by_period() (in module cybench.util.features) _cast_to_tensor() (cybench.datasets.torch_dataset.TorchDataset class method) _count_threshold() (in module cybench.util.features)

_design_features() (cybench.models.sklearn_models.BaseSklearnModel method) _empty_df_target() (cybench.datasets.dataset.Dataset static method) _estimate_trend() (cybench.models.trend_models.TrendModel method) _filter_df_on_index() (cybench.datasets.dataset.Dataset static method) _find_optimal_trend_window() (cybench.models.trend_models.TrendModel method) _forward_pass() (cybench.models.nn_models.BaseNNModel method) _get_feature_data() (cybench.datasets.dataset.Dataset method) _get_validation_splits() (cybench.runs.agml_workshop.LSTMModel method) _load_and_preprocess_time_series_data() (in module cybench.datasets.configured) _normalize_inputs() (cybench.models.nn_models.BaseNNModel method) _optimize_hyperparameters() (cybench.models.nn_models.BaseNNModel method) (cybench.models.sklearn_models.BaseSklearnModel method) (cybench.runs.agml_workshop.LSTMModel method) _predict() (cybench.models.sklearn_models.BaseSklearnModel method) _predict_trend() (cybench.models.trend_models.TrendModel method) _split_df_on_index() (cybench.datasets.dataset.Dataset static method) _train_and_validate() (cybench.models.nn_models.BaseNNModel method) _train_epoch() (cybench.models.nn_models.BaseNNModel method) (cybench.runs.agml_workshop.LSTMModel method) _train_final_model() (cybench.models.nn_models.BaseNNModel method) _validate_dfs() (cybench.datasets.dataset.Dataset static method)

A

add_cutoff_days() (in module cybench.datasets.alignment) align_inputs_and_labels() (in module cybench.datasets.alignment)

align_to_crop_season_window() (in module cybench.datasets.alignment) AverageYieldModel (class in cybench.models.naive_models)

B

BaselineInceptionTime (class in cybench.models.nn_models) BaselineLSTM (class in cybench.models.nn_models) BaselineTransformer (class in cybench.models.nn_models) BaseModel (class in cybench.models.model)

BaseNNModel (class in cybench.models.nn_models) BaseSklearnModel (class in cybench.models.sklearn_models) batch_tensors() (in module cybench.util.torch) box_plots_metrics() (in module cybench.runs.results_plots) box_plots_residuals() (in module cybench.runs.results_plots)

C

collate_fn() (cybench.datasets.torch_dataset.TorchDataset class method) comet_wrapper() (in module cybench.evaluation.log_experiments) compute_crop_season_window() (in module cybench.datasets.alignment) compute_metrics() (in module cybench.runs.run_benchmark) crop (cybench.datasets.dataset.Dataset property) cybench module cybench.config module cybench.datasets module cybench.datasets.alignment module cybench.datasets.configured module cybench.datasets.dataset module cybench.datasets.modified_dataset module cybench.datasets.torch_dataset module cybench.evaluation module cybench.evaluation.eval module cybench.evaluation.log_experiments module cybench.models module cybench.models.model module

cybench.models.naive_models module cybench.models.nn_models module cybench.models.residual_models module cybench.models.sklearn_models module cybench.models.trend_models module cybench.runs module cybench.runs.agml_workshop module cybench.runs.process_results module cybench.runs.results_plots module cybench.runs.run_benchmark module cybench.runs.validate_model module cybench.util module cybench.util.data module cybench.util.features module cybench.util.torch module

D

data_to_pandas() (in module cybench.util.data) Dataset (class in cybench.datasets.dataset) date_from_dekad() (in module cybench.runs.agml_workshop)

dekad_from_date() (in module cybench.util.features) design_features() (in module cybench.util.features) df_to_markdown() (in module cybench.runs.process_results)

E

evaluate_model() (in module cybench.evaluation.eval)

evaluate_predictions() (in module cybench.evaluation.eval) existing_comet() (in module cybench.evaluation.log_experiments)

F

feature_names (cybench.datasets.dataset.Dataset property) fit() (cybench.models.model.BaseModel method) (cybench.models.naive_models.AverageYieldModel method) (cybench.models.nn_models.BaselineInceptionTime method) (cybench.models.nn_models.BaselineLSTM method) (cybench.models.nn_models.BaselineTransformer method) (cybench.models.nn_models.BaseNNModel method) (cybench.models.residual_models.ResidualModel method) (cybench.models.sklearn_models.BaseSklearnModel method) (cybench.models.sklearn_models.SklearnRandomForest method) (cybench.models.sklearn_models.SklearnRidge method) (cybench.models.trend_models.TrendModel method) (cybench.runs.agml_workshop.LSTMModel method)

format_row() (in module cybench.runs.process_results) fortnight_from_date() (in module cybench.util.features) forward() (cybench.models.nn_models.BaselineInceptionTime method) (cybench.models.nn_models.BaselineLSTM method) (cybench.models.nn_models.BaselineTransformer method) (cybench.runs.agml_workshop.LSTMModel method)

G

get_comet_api_key() (in module cybench.evaluation.log_experiments) get_cybench_data() (in module cybench.runs.agml_workshop) get_cybench_data_aligned_to_crop_season() (in module cybench.runs.agml_workshop) get_default_metrics() (in module cybench.evaluation.eval)

get_normalization_params() (cybench.datasets.dataset.Dataset method) get_prediction_residuals() (in module cybench.runs.run_benchmark) get_workshop_data() (in module cybench.runs.agml_workshop) growing_degree_days() (in module cybench.util.features)

I

InceptionTimeRes (class in cybench.models.residual_models)

indices() (cybench.datasets.dataset.Dataset method)

L

load() (cybench.datasets.dataset.Dataset static method) (cybench.models.model.BaseModel method) (cybench.models.naive_models.AverageYieldModel method) (cybench.models.nn_models.BaseNNModel class method) (cybench.models.residual_models.ResidualModel method) (cybench.models.sklearn_models.BaseSklearnModel method) (cybench.models.trend_models.TrendModel method) (cybench.runs.agml_workshop.LSTMModel class method)

load_dfs() (in module cybench.datasets.configured) load_dfs_crop() (in module cybench.datasets.configured) load_results() (in module cybench.runs.run_benchmark) location_ids (cybench.datasets.dataset.Dataset property) log_benchmark_to_comet() (in module cybench.evaluation.log_experiments) log_benchmark_to_comet_post_hoc() (in module cybench.evaluation.log_experiments) log_to_comet_post_hoc() (in module cybench.evaluation.log_experiments) LSTMModel (class in cybench.runs.agml_workshop) LSTMRes (class in cybench.models.residual_models)

M

mape() (in module cybench.evaluation.eval) max_season_window_length (cybench.datasets.dataset.Dataset property) MAX_TREND_WINDOW_SIZE (cybench.models.trend_models.TrendModel attribute) metric() (in module cybench.evaluation.eval) MIN_TREND_WINDOW_SIZE (cybench.models.trend_models.TrendModel attribute) ModifiedTargetsDataset (class in cybench.datasets.modified_dataset) module cybench cybench.config cybench.datasets cybench.datasets.alignment cybench.datasets.configured cybench.datasets.dataset cybench.datasets.modified_dataset cybench.datasets.torch_dataset cybench.evaluation cybench.evaluation.eval cybench.evaluation.log_experiments cybench.models cybench.models.model cybench.models.naive_models cybench.models.nn_models cybench.models.residual_models cybench.models.sklearn_models cybench.models.trend_models cybench.runs cybench.runs.agml_workshop cybench.runs.process_results cybench.runs.results_plots cybench.runs.run_benchmark cybench.runs.validate_model cybench.util cybench.util.data cybench.util.features cybench.util.torch

N

normalized_rmse() (in module cybench.evaluation.eval)

P

plot_bars() (in module cybench.runs.results_plots) plot_graph() (in module cybench.runs.results_plots) plot_metrics() (in module cybench.runs.results_plots) plot_yearly_metrics() (in module cybench.runs.results_plots) plot_yearly_residuals() (in module cybench.runs.results_plots) predict() (cybench.models.model.BaseModel method) (cybench.models.nn_models.BaseNNModel method) (cybench.models.residual_models.ResidualModel method) (cybench.models.sklearn_models.BaseSklearnModel method) (cybench.models.trend_models.TrendModel method) (cybench.runs.agml_workshop.LSTMModel method)

predict_items() (cybench.models.model.BaseModel method) (cybench.models.naive_models.AverageYieldModel method) (cybench.models.nn_models.BaseNNModel method) (cybench.models.residual_models.ResidualModel method) (cybench.models.sklearn_models.BaseSklearnModel method) (cybench.models.trend_models.TrendModel method) (cybench.runs.agml_workshop.LSTMModel method)

R

r2() (in module cybench.evaluation.eval) RandomForestRes (class in cybench.models.residual_models) ResidualModel (class in cybench.models.residual_models) results_to_metrics() (in module cybench.runs.process_results)

results_to_residuals() (in module cybench.runs.process_results) RidgeRes (class in cybench.models.residual_models) run_benchmark() (in module cybench.runs.run_benchmark) run_benchmark_on_all_data() (in module cybench.runs.run_benchmark)

S

save() (cybench.models.model.BaseModel method) (cybench.models.naive_models.AverageYieldModel method) (cybench.models.nn_models.BaseNNModel method) (cybench.models.residual_models.ResidualModel method) (cybench.models.sklearn_models.BaseSklearnModel method) (cybench.models.trend_models.TrendModel method) (cybench.runs.agml_workshop.LSTMModel method)

separate_ts_static_inputs() (in module cybench.models.nn_models) SklearnRandomForest (class in cybench.models.sklearn_models) SklearnRidge (class in cybench.models.sklearn_models) split_on_years() (cybench.datasets.dataset.Dataset method)

T

targets() (cybench.datasets.dataset.Dataset method) time_series_have_same_length (cybench.datasets.dataset.Dataset property)

TorchDataset (class in cybench.datasets.torch_dataset) TransformerRes (class in cybench.models.residual_models) TrendModel (class in cybench.models.trend_models)

U

unpack_time_series() (in module cybench.util.features)

V

validate_agml_workshop_results() (in module cybench.runs.agml_workshop)

validate_single_model() (in module cybench.runs.validate_model)

W

write_results_to_table() (in module cybench.runs.process_results)

Y

years (cybench.datasets.dataset.Dataset property)